How to format your references using the Pathogens citation style

This is a short guide how to format citations and the bibliography in a manuscript for Pathogens. For a complete guide how to prepare your manuscript refer to the journal's instructions to authors.

Using reference management software

Typically you don't format your citations and bibliography by hand. The easiest way is to use a reference manager:

Paperpile	The citation style is built in and you can choose it in Settings > Citation Style or Paperpile > Citation Style in Google Docs.
EndNote	Find the style here: output styles overview
Mendeley, Zotero, Papers, and others	The style is either built in or you can download a CSL file that is supported by most references management programs.
BibTeX	BibTeX syles are usually part of a LaTeX template. Check the instructions to authors if the publisher offers a LaTeX template for this journal.

Journal articles

Those examples are references to articles in scholarly journals and how they are supposed to appear in your bibliography.

Not all journals organize their published articles in volumes and issues, so these fields are optional. Some electronic journals do not provide a page range, but instead list an article identifier. In a case like this it's safe to use the article identifier instead of the page range.

A journal article with 1 author

Ehlers, M.D. Eppendorf 2003 Prize-Winning Essay. Ubiquitin and the Deconstruction of Synapses. Science 2003, 302, 800–801.

A journal article with 2 authors

Wood, S.F.; Mador, J.K. Science and Regulation. Uncapping Conflict of Interest? Science 2013, 340, 1172–1173.

A journal article with 3 authors

Cohn, A.; Fehr, E.; Maréchal, M.A. Business Culture and Dishonesty in the Banking Industry. Nature 2014, 516, 86–89.

A journal article with 4 or more authors

Dollar, G.L.; Weber, U.; Mlodzik, M.; Sokol, S.Y. Regulation of Lethal Giant Larvae by Dishevelled. Nature 2005, 437, 1376–1380.

Books and book chapters

Here are examples of references for authored and edited books as well as book chapters.

An authored book

Forsberg, K.; Mansdorf, S.Z. Quick Selection Guide to Chemical Protective Clothing; John Wiley & Sons, Inc.: Hoboken, NJ, 2005; ISBN 9780471721680.

An edited book

MR Imaging in White Matter Diseases of the Brain and Spinal Cord; Filippi, M., Stefano, N.D., Dousset, V., McGowan, J.C., Eds.; Medical Radiology Diagnostic Imaging; Springer: Berlin, Heidelberg, 2005; ISBN 9783540402305.

A chapter in an edited book

Reiche, I.; Gourrier, A. Informative Potential of Multiscale Observations in Archaeological Biominerals Down to Nanoscale. In Nanoscience and Cultural Heritage; Dillmann, P., Bellot-Gurlet, L., Nenner, I., Eds.; Atlantis Press: Paris, 2016; pp. 75–122 ISBN 9789462391970.

Web sites

Sometimes references to web sites should appear directly in the text rather than in the bibliography. Refer to the Instructions to authors for Pathogens.

Blog post

Andrew, E. Everything You Need To Know About Cometary Exploration Available online: https://www.iflscience.com/space/everything-you-need-know-about-cometary-exploration/ (accessed on 30 October 2018).

Reports

This example shows the general structure used for government reports, technical reports, and scientific reports. If you can't locate the report number then it might be better to cite the report as a book. For reports it is usually not individual people that are credited as authors, but a governmental department or agency like "U. S. Food and Drug Administration" or "National Cancer Institute".

Government report

Government Accountability Office Student Loans: Selected Characteristics of Schools in Two Major Federal Loan Programs; U.S. Government Printing Office: Washington, DC, 1997;

Theses and dissertations

Theses including Ph.D. dissertations, Master's theses or Bachelor theses follow the basic format outlined below.

Doctoral dissertation

Burugupalli, R.T. 2x1 Space-Time MIMO-OFDM Parallel Cancellation Scheme with Viterbi Decoding. Doctoral dissertation, California State University, Long Beach: Long Beach, CA, 2017.

News paper articles

Unlike scholarly journals, news papers do not usually have a volume and issue number. Instead, the full date and page number is required for a correct reference.

New York Times article

Kenigsberg, B. An Attack’s Fresh Resonance. New York Times 2017, C6.

In-text citations

References should be cited in the text by sequential numbers in square brackets:

This sentence cites one reference [1].
This sentence cites two references [1,2].
This sentence cites four references [1–4].

About the journal

Full journal title	Pathogens
Abbreviation	Pathogens
ISSN (online)	2076-0817
Scope