How to format your references using the Journal of Proteomics citation style

This is a short guide how to format citations and the bibliography in a manuscript for Journal of Proteomics. For a complete guide how to prepare your manuscript refer to the journal's instructions to authors.

Using reference management software

Typically you don't format your citations and bibliography by hand. The easiest way is to use a reference manager:

PaperpileThe citation style is built in and you can choose it in Settings > Citation Style or Paperpile > Citation Style in Google Docs.
EndNoteDownload the output style file
Mendeley, Zotero, Papers, and othersThe style is either built in or you can download a CSL file that is supported by most references management programs.
BibTeXBibTeX syles are usually part of a LaTeX template. Check the instructions to authors if the publisher offers a LaTeX template for this journal.

Journal articles

Those examples are references to articles in scholarly journals and how they are supposed to appear in your bibliography.

Not all journals organize their published articles in volumes and issues, so these fields are optional. Some electronic journals do not provide a page range, but instead list an article identifier. In a case like this it's safe to use the article identifier instead of the page range.

A journal article with 1 author
B. Burke, Cell biology: nuclear dilemma resolved, Nature. 522 (2015) 159–160.
A journal article with 2 authors
J.O. Mudd, D.A. Kass, Tackling heart failure in the twenty-first century, Nature. 451 (2008) 919–928.
A journal article with 3 authors
H.M. Baulch, E.H. Stanley, E.S. Bernhardt, Can algal uptake stop NO3(-) pollution?, Nature. 477 (2011) E3; discussion E3-4.
A journal article with 4 or more authors
H.R. Rodewald, S. Paul, C. Haller, H. Bluethmann, C. Blum, Thymus medulla consisting of epithelial islets each derived from a single progenitor, Nature. 414 (2001) 763–768.

Books and book chapters

Here are examples of references for authored and edited books as well as book chapters.

An authored book
A. Krings, R.R. Braham, Guide to Tendrillate Climbers of Costa Rican Mountains, Blackwell Publishing, Oxford, UK, 2008.
An edited book
P.T. Cagle, T.C. Allen, M.B. Beasley, L.R. Chirieac, S. Dacic, A.C. Borczuk, K.M. Kerr, eds., Molecular Pathology of Lung Cancer, Springer, New York, NY, 2012.
A chapter in an edited book
B. Kegl, M. Kegl, S. Pehan, Effects of Biodiesel Usage on Injection Process Characteristics, in: M. Kegl, S. Pehan (Eds.), Green Diesel Engines: Biodiesel Usage in Diesel Engines, Springer, London, 2013: pp. 127–152.

Web sites

Sometimes references to web sites should appear directly in the text rather than in the bibliography. Refer to the Instructions to authors for Journal of Proteomics.

Blog post
E. Andrew, Fish Can Make Their Own Sunscreen, IFLScience. (2015). (accessed October 30, 2018).


This example shows the general structure used for government reports, technical reports, and scientific reports. If you can't locate the report number then it might be better to cite the report as a book. For reports it is usually not individual people that are credited as authors, but a governmental department or agency like "U. S. Food and Drug Administration" or "National Cancer Institute".

Government report
Government Accountability Office, Office of Telecommunications Policy’s Contract for a Publication on Intercepting Electronic Communications, U.S. Government Printing Office, Washington, DC, 1978.

Theses and dissertations

Theses including Ph.D. dissertations, Master's theses or Bachelor theses follow the basic format outlined below.

Doctoral dissertation
S.M. Shrank, ShareOne: An iOS resource application for caseworkers: A grant proposal, Doctoral dissertation, California State University, Long Beach, 2017.

News paper articles

Unlike scholarly journals, news papers do not usually have a volume and issue number. Instead, the full date and page number is required for a correct reference.

New York Times article
S. Hollander, The “Roswell” Army Fights for Its Show on the Web, New York Times. (2001) 232.

In-text citations

References should be cited in the text by sequential numbers in square brackets:

This sentence cites one reference [1].
This sentence cites two references [1,2].
This sentence cites four references [1–4].

About the journal

Full journal titleJournal of Proteomics
AbbreviationJ. Proteomics
ISSN (print)1874-3919

Other styles