How to format your references using the Clinical Infectious Diseases citation style

This is a short guide how to format citations and the bibliography in a manuscript for Clinical Infectious Diseases. For a complete guide how to prepare your manuscript refer to the journal's instructions to authors.

Using reference management software

Typically you don't format your citations and bibliography by hand. The easiest way is to use a reference manager:

Paperpile	The citation style is built in and you can choose it in Settings > Citation Style or Paperpile > Citation Style in Google Docs.
EndNote	Download the output style file
Mendeley, Zotero, Papers, and others	The style is either built in or you can download a CSL file that is supported by most references management programs.
BibTeX	BibTeX syles are usually part of a LaTeX template. Check the instructions to authors if the publisher offers a LaTeX template for this journal.

Journal articles

Those examples are references to articles in scholarly journals and how they are supposed to appear in your bibliography.

Not all journals organize their published articles in volumes and issues, so these fields are optional. Some electronic journals do not provide a page range, but instead list an article identifier. In a case like this it's safe to use the article identifier instead of the page range.

A journal article with 1 author

Whipple FL. ESSAYS ON SCIENCE AND SOCIETY: Of Comets and Meteors. Science 2000; 289:728.

A journal article with 2 authors

Vasseur DA, Fox JW. Phase-locking and environmental fluctuations generate synchrony in a predator-prey community. Nature 2009; 460:1007–1010.

A journal article with 3 authors

Sato T, Atomi H, Imanaka T. Archaeal type III RuBisCOs function in a pathway for AMP metabolism. Science 2007; 315:1003–1006.

A journal article with 7 or more authors

Kim HJ, Oh SA, Brownfield L, et al. Control of plant germline proliferation by SCF(FBL17) degradation of cell cycle inhibitors. Nature 2008; 455:1134–1137.

Books and book chapters

Here are examples of references for authored and edited books as well as book chapters.

An authored book

Andersson C, Freeman D, James I, Johnston A, Ljung S. Mobile Media and Applications - From Concept to Cash. Chichester, UK: John Wiley & Sons, Ltd, 2006.

An edited book

Chio CD, Cagnoni S, Cotta C, et al., editors. Applications of Evolutionary Computation: EvoApplications 2011: EvoCOMPLEX, EvoGAMES, EvoIASP, EvoINTELLIGENCE, EvoNUM, and EvoSTOC, Torino, Italy, April 27-29, 2011, Proceedings, Part I. Berlin, Heidelberg: Springer, 2011.

A chapter in an edited book

Hansen MR, Kristensen JT. Experiences with Functional Programming in an Introductory Curriculum. In: Bennedsen J, Caspersen ME, Kölling M, eds. Reflections on the Teaching of Programming: Methods and Implementations. Berlin, Heidelberg: Springer, 2008: 30–46.

Web sites

Sometimes references to web sites should appear directly in the text rather than in the bibliography. Refer to the Instructions to authors for Clinical Infectious Diseases.

Blog post

Taub B. Scientists Have Released An Enormous List Of Common Chemicals That Could Harm Brain Development. IFLScience, 2016. Available at: https://www.iflscience.com/health-and-medicine/common-chemicals-place-us-children-at-high-risk-of-mental-disorders-say-scientists/. Accessed 30 October 2018.

Reports

This example shows the general structure used for government reports, technical reports, and scientific reports. If you can't locate the report number then it might be better to cite the report as a book. For reports it is usually not individual people that are credited as authors, but a governmental department or agency like "U. S. Food and Drug Administration" or "National Cancer Institute".

Government report

Government Accountability Office. A List of Selected GAO Publications Containing Checklists or Guidance on Computer Software Topics. Washington, DC: U.S. Government Printing Office, 1984.

Theses and dissertations

Theses including Ph.D. dissertations, Master's theses or Bachelor theses follow the basic format outlined below.

Doctoral dissertation

Corbets JB. Evaluating System Architecture Quality and Architecting Team Performance Using Information Quality Theory. 2017;

News paper articles

Unlike scholarly journals, news papers do not usually have a volume and issue number. Instead, the full date and page number is required for a correct reference.

New York Times article

Dominus PS. Cambio de vidas: Los hermanos perdidos de Bogotá. New York Times. 2015; :MM34.

In-text citations

References should be cited in the text by sequential numbers in square brackets:

This sentence cites one reference [1].
This sentence cites two references [1,2].
This sentence cites four references [1–4].

About the journal

Full journal title	Clinical Infectious Diseases
Abbreviation	Clin. Infect. Dis.
ISSN (print)	1058-4838
ISSN (online)	1537-6591
Scope	Infectious Diseases Microbiology (medical)